IL_9PSI_025

3D structure

PDB id

9PSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

AUCUACAAUCAACCAAC*GUCAUU

Length

23 nucleotides

Bulged bases

9PSI|1|A|C|2393, 9PSI|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSI|1|A|A|2384
9PSI|1|A|U|2385
9PSI|1|A|C|2386
9PSI|1|A|U|2387
9PSI|1|A|A|2388
9PSI|1|A|C|2389
9PSI|1|A|A|2390
9PSI|1|A|A|2391
9PSI|1|A|U|2392
9PSI|1|A|C|2393
9PSI|1|A|A|2394
9PSI|1|A|A|2395
9PSI|1|A|C|2396
9PSI|1|A|C|2397
9PSI|1|A|A|2398
9PSI|1|A|A|2399
9PSI|1|A|C|2400
*
9PSI|1|A|G|2403
9PSI|1|A|U|2404
9PSI|1|A|C|2405
9PSI|1|A|A|2406
9PSI|1|A|U|2407
9PSI|1|A|U|2408

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial