IL_9PSI_031

3D structure

PDB id

9PSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GCAAAUCUUA*UUCAGC

Length

16 nucleotides

Bulged bases

9PSI|1|A|U|2485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSI|1|A|G|2478
9PSI|1|A|C|2479
9PSI|1|A|A|2480
9PSI|1|A|A|2481
9PSI|1|A|A|2482
9PSI|1|A|U|2483
9PSI|1|A|C|2484
9PSI|1|A|U|2485
9PSI|1|A|U|2486
9PSI|1|A|A|2487
*
9PSI|1|A|U|2648
9PSI|1|A|U|2649
9PSI|1|A|C|2650
9PSI|1|A|A|2651
9PSI|1|A|G|2652
9PSI|1|A|C|2653

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain E

39S ribosomal protein L3, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial

Chain Q

39S ribosomal protein L19, mitochondrial