IL_9PSI_066

3D structure

PDB id

9PSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UCU*AAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PSI_066 not in the Motif Atlas

Geometric match to IL_9DFE_030

Geometric discrepancy: 0.1794

The information below is about IL_9DFE_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9PSI|1|AA|U|727
9PSI|1|AA|C|728
9PSI|1|AA|U|729
*
9PSI|1|AA|A|744
9PSI|1|AA|A|745
9PSI|1|AA|A|746
9PSI|1|AA|A|747

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial