IL_9PSM_043

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UACCUAACAAAC*GUCCUAAACUA

Length

23 nucleotides

Bulged bases

9PSM|1|A|C|2762, 9PSM|1|A|U|2763, 9PSM|1|A|A|2764, 9PSM|1|A|A|2767, 9PSM|1|A|C|2780, 9PSM|1|A|U|2781, 9PSM|1|A|A|2782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSM|1|A|U|2759
9PSM|1|A|A|2760
9PSM|1|A|C|2761
9PSM|1|A|C|2762
9PSM|1|A|U|2763
9PSM|1|A|A|2764
9PSM|1|A|A|2765
9PSM|1|A|C|2766
9PSM|1|A|A|2767
9PSM|1|A|A|2768
9PSM|1|A|A|2769
9PSM|1|A|C|2770
*
9PSM|1|A|G|2777
9PSM|1|A|U|2778
9PSM|1|A|C|2779
9PSM|1|A|C|2780
9PSM|1|A|U|2781
9PSM|1|A|A|2782
9PSM|1|A|A|2783
9PSM|1|A|A|2784
9PSM|1|A|C|2785
9PSM|1|A|U|2786
9PSM|1|A|A|2787

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain H

39S ribosomal protein L9, mitochondrial

Chain z

Large ribosomal subunit protein uL1m