IL_9PSM_092

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUUGCUCAG*CCCAUG

Length

15 nucleotides

Bulged bases

9PSM|1|AA|U|1246, 9PSM|1|AA|C|1250, 9PSM|1|AA|U|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSM|1|AA|C|1244
9PSM|1|AA|U|1245
9PSM|1|AA|U|1246
9PSM|1|AA|G|1247
9PSM|1|AA|C|1248
9PSM|1|AA|U|1249
9PSM|1|AA|C|1250
9PSM|1|AA|A|1251
9PSM|1|AA|G|1252
*
9PSM|1|AA|C|1340
9PSM|1|AA|C|1341
9PSM|1|AA|C|1342
9PSM|1|AA|A|1343
9PSM|1|AA|U|1344
9PSM|1|AA|G|1345

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial