IL_9PZG_026

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9PZG|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_026 not in the Motif Atlas

Geometric match to IL_8B0X_025

Geometric discrepancy: 0.0767

The information below is about IL_8B0X_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9PZG|1|A|C|569
9PZG|1|A|G|570
9PZG|1|A|U|571
9PZG|1|A|A|572
9PZG|1|A|A|573
9PZG|1|A|A|574
9PZG|1|A|G|575
*
9PZG|1|A|C|880
9PZG|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17