IL_9PZG_048

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9PZG|1|A|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_048 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.3291

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9PZG|1|A|U|1060
9PZG|1|A|G|1061
*
9PZG|1|A|C|1195
9PZG|1|A|A|1196
9PZG|1|A|A|1197

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain E

Small ribosomal subunit protein uS5

Chain N

Small ribosomal subunit protein uS14