IL_9PZG_057

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_057 not in the Motif Atlas

Geometric match to IL_8GLP_025

Geometric discrepancy: 0.1223

The information below is about IL_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9PZG|1|A|C|1412
9PZG|1|A|A|1413
9PZG|1|A|U|1414
*
9PZG|1|A|G|1486
9PZG|1|A|G|1487
9PZG|1|A|G|1488

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain W

Ribosomal RNA small subunit methyltransferase I