IL_9PZG_058

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_058 not in the Motif Atlas

Geometric match to IL_8GLP_052

Geometric discrepancy: 0.1421

The information below is about IL_8GLP_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9PZG|1|A|G|1416
9PZG|1|A|G|1417
9PZG|1|A|A|1418
9PZG|1|A|G|1419
*
9PZG|1|A|U|1481
9PZG|1|A|G|1482
9PZG|1|A|A|1483
9PZG|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

Ribosomal RNA small subunit methyltransferase I