IL_9Q1Q_002
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUACGG*UGACAGG
- Length
- 14 nucleotides
- Bulged bases
- 9Q1Q|1|1|C|1343, 9Q1Q|1|1|A|1388, 9Q1Q|1|1|C|1389, 9Q1Q|1|1|A|1390, 9Q1Q|1|1|G|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|1|U|1339
9Q1Q|1|1|A|1340
9Q1Q|1|1|U|1341
9Q1Q|1|1|A|1342
9Q1Q|1|1|C|1343
9Q1Q|1|1|G|1344
9Q1Q|1|1|G|1345
*
9Q1Q|1|1|U|1386
9Q1Q|1|1|G|1387
9Q1Q|1|1|A|1388
9Q1Q|1|1|C|1389
9Q1Q|1|1|A|1390
9Q1Q|1|1|G|1391
9Q1Q|1|1|G|1392
Current chains
- Chain 1
- NediV IRES
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- Large ribosomal subunit protein uL1
Coloring options: