IL_9Q1Q_006

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_006 not in the Motif Atlas

Geometric match to IL_7MLW_006

Geometric discrepancy: 0.1817

The information below is about IL_7MLW_006

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9Q1Q|1|1|C|1461
9Q1Q|1|1|C|1462
9Q1Q|1|1|U|1463
*
9Q1Q|1|1|A|1472
9Q1Q|1|1|A|1473
9Q1Q|1|1|G|1474

Current chains

Chain 1

NediV IRES

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain PP

Small ribosomal subunit protein uS19