IL_9Q1Q_007

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9Q1Q|1|8|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_007 not in the Motif Atlas

Homologous match to IL_8GLP_001

Geometric discrepancy: 0.1658

The information below is about IL_8GLP_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Q1Q|1|5|C|6
9Q1Q|1|5|C|7
*
9Q1Q|1|8|G|149
9Q1Q|1|8|C|150
9Q1Q|1|8|G|151

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein eL8

Chain N

60S ribosomal protein L15

Chain X

Large ribosomal subunit protein uL23