IL_9Q1Q_012
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_012 not in the Motif Atlas
- Homologous match to IL_8GLP_006
- Geometric discrepancy: 0.1222
- The information below is about IL_8GLP_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9Q1Q|1|5|C|81
9Q1Q|1|5|U|82
9Q1Q|1|5|C|83
9Q1Q|1|5|A|84
9Q1Q|1|5|G|85
9Q1Q|1|5|U|86
9Q1Q|1|5|A|87
9Q1Q|1|5|A|88
*
9Q1Q|1|5|U|96
9Q1Q|1|5|G|97
9Q1Q|1|5|A|98
9Q1Q|1|5|A|99
9Q1Q|1|5|C|100
9Q1Q|1|5|A|101
9Q1Q|1|5|G|102
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain Q
- eL18
- Chain a
- 60S ribosomal protein L27a
Coloring options: