IL_9Q1Q_013

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9Q1Q|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_013 not in the Motif Atlas

Geometric match to IL_8GLP_007

Geometric discrepancy: 0.1889

The information below is about IL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36175.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9Q1Q|1|5|C|118
9Q1Q|1|5|G|119
9Q1Q|1|5|A|120
9Q1Q|1|5|A|121
*
9Q1Q|1|5|U|152
9Q1Q|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein eL8

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35