IL_9Q1Q_025
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9Q1Q|1|5|G|409, 9Q1Q|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_025 not in the Motif Atlas
- Geometric match to IL_8GLP_019
- Geometric discrepancy: 0.0911
- The information below is about IL_8GLP_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.4
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 11
Unit IDs
9Q1Q|1|5|G|387
9Q1Q|1|5|A|388
9Q1Q|1|5|A|389
9Q1Q|1|5|C|390
*
9Q1Q|1|5|G|401
9Q1Q|1|5|A|402
9Q1Q|1|5|G|403
9Q1Q|1|5|U|404
9Q1Q|1|5|U|405
9Q1Q|1|5|C|406
9Q1Q|1|5|A|407
9Q1Q|1|5|A|408
9Q1Q|1|5|G|409
9Q1Q|1|5|A|410
9Q1Q|1|5|G|411
9Q1Q|1|5|G|412
9Q1Q|1|5|G|413
9Q1Q|1|5|C|414
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L17
- Chain Y
- 60S ribosomal protein L26
- Chain l
- 60S ribosomal protein L39
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