IL_9Q1Q_032

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

9Q1Q|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_032 not in the Motif Atlas

Geometric match to IL_7KGA_004

Geometric discrepancy: 0.2687

The information below is about IL_7KGA_004

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9Q1Q|1|5|G|481
9Q1Q|1|5|C|481|||A
9Q1Q|1|5|G|482
*
9Q1Q|1|5|C|672
9Q1Q|1|5|C|673

Current chains

Chain 5

28S rRNA

Nearby chains

Chain r

60S ribosomal protein L28