IL_9Q1Q_061
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|1650, 9Q1Q|1|5|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_061 not in the Motif Atlas
- Homologous match to IL_8GLP_290
- Geometric discrepancy: 0.1151
- The information below is about IL_8GLP_290
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.4
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9Q1Q|1|5|G|1522
9Q1Q|1|5|A|1523
9Q1Q|1|5|A|1524
9Q1Q|1|5|A|1525
9Q1Q|1|5|G|1526
*
9Q1Q|1|5|C|1648
9Q1Q|1|5|U|1649
9Q1Q|1|5|A|1650
9Q1Q|1|5|G|1651
9Q1Q|1|5|U|1652
9Q1Q|1|5|A|1653
9Q1Q|1|5|G|1654
9Q1Q|1|5|C|1655
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- 60S ribosomal protein L37
Coloring options: