IL_9Q1Q_068
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCUG*CUAGU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_068 not in the Motif Atlas
- Geometric match to IL_8OI5_009
- Geometric discrepancy: 0.3781
- The information below is about IL_8OI5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10004.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Q1Q|1|5|G|1685
9Q1Q|1|5|C|1686
9Q1Q|1|5|U|1687
9Q1Q|1|5|G|1688
*
9Q1Q|1|5|C|1848
9Q1Q|1|5|U|1849
9Q1Q|1|5|A|1850
9Q1Q|1|5|G|1851
9Q1Q|1|5|U|1852
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain Q
- eL18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- eL29
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