IL_9Q1Q_080

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAG*CCACA

Length

10 nucleotides

Bulged bases

9Q1Q|1|5|C|2070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|U|1905
9Q1Q|1|5|U|1906
9Q1Q|1|5|A|1907
9Q1Q|1|5|A|1908
9Q1Q|1|5|G|1909
*
9Q1Q|1|5|C|2067
9Q1Q|1|5|C|2068
9Q1Q|1|5|A|2069
9Q1Q|1|5|C|2070
9Q1Q|1|5|A|2071

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L7

Chain Q

eL18

Chain e

eL32

Chain f

Large ribosomal subunit protein eL33