IL_9Q1Q_081
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_081 not in the Motif Atlas
- Homologous match to IL_8GLP_076
- Geometric discrepancy: 0.1617
- The information below is about IL_8GLP_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.3
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9Q1Q|1|5|C|1911
9Q1Q|1|5|G|1912
9Q1Q|1|5|C|1913
9Q1Q|1|5|C|1914
9Q1Q|1|5|C|1915
9Q1Q|1|5|G|1916
9Q1Q|1|5|A|1917
9Q1Q|1|5|U|1918
*
9Q1Q|1|5|G|2064
9Q1Q|1|5|G|2065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7
- Chain O
- Large ribosomal subunit protein uL13
- Chain S
- eL20
- Chain f
- Large ribosomal subunit protein eL33
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