IL_9Q1Q_088

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9Q1Q|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_088 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1965

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9Q1Q|1|5|G|2001
9Q1Q|1|5|A|2002
9Q1Q|1|5|G|2003
9Q1Q|1|5|U|2004
9Q1Q|1|5|G|2005
*
9Q1Q|1|5|C|2014
9Q1Q|1|5|U|2015
9Q1Q|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains

Chain t

uL11