IL_9Q1Q_089
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCG*CG
- Length
- 5 nucleotides
- Bulged bases
- 9Q1Q|1|5|C|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_089 not in the Motif Atlas
- Homologous match to IL_8GLP_083
- Geometric discrepancy: 0.2217
- The information below is about IL_8GLP_083
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 72
Unit IDs
9Q1Q|1|5|C|2083
9Q1Q|1|5|C|2084
9Q1Q|1|5|G|2085
*
9Q1Q|1|5|C|2272
9Q1Q|1|5|G|2273
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain F
- 60S ribosomal protein L7
- Chain Q
- eL18
- Chain e
- eL32
Coloring options: