IL_9Q1Q_092
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 9Q1Q|1|5|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_092 not in the Motif Atlas
- Homologous match to IL_8GLP_086
- Geometric discrepancy: 0.1474
- The information below is about IL_8GLP_086
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 31
Unit IDs
9Q1Q|1|5|C|2302
9Q1Q|1|5|C|2303
9Q1Q|1|5|U|2304
9Q1Q|1|5|U|2305
9Q1Q|1|5|G|2306
9Q1Q|1|5|A|2307
9Q1Q|1|5|A|2308
9Q1Q|1|5|G|2309
*
9Q1Q|1|5|U|2329
9Q1Q|1|5|G|2330
9Q1Q|1|5|G|2331
9Q1Q|1|5|A|2332
9Q1Q|1|5|G|2333
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L26
- Chain e
- eL32
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