IL_9Q1Q_133
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUGUAGAAUAA*UAC
- Length
- 15 nucleotides
- Bulged bases
- 9Q1Q|1|5|G|3958, 9Q1Q|1|5|U|3959, 9Q1Q|1|5|A|3965
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|G|3955
9Q1Q|1|5|G|3956
9Q1Q|1|5|U|3957
9Q1Q|1|5|G|3958
9Q1Q|1|5|U|3959
9Q1Q|1|5|A|3960
9Q1Q|1|5|G|3961
9Q1Q|1|5|A|3962
9Q1Q|1|5|A|3963
9Q1Q|1|5|U|3964
9Q1Q|1|5|A|3965
9Q1Q|1|5|A|3966
*
9Q1Q|1|5|U|4055
9Q1Q|1|5|A|4056
9Q1Q|1|5|C|4057
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL1
Coloring options: