IL_9Q1Q_134
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGAG*CGCCGGUGAAAUACC
- Length
- 20 nucleotides
- Bulged bases
- 9Q1Q|1|5|G|3971, 9Q1Q|1|5|A|4046, 9Q1Q|1|5|A|4047
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|G|3969
9Q1Q|1|5|G|3970
9Q1Q|1|5|G|3971
9Q1Q|1|5|A|3972
9Q1Q|1|5|G|3973
*
9Q1Q|1|5|C|4038
9Q1Q|1|5|G|4039
9Q1Q|1|5|C|4040
9Q1Q|1|5|C|4041
9Q1Q|1|5|G|4042
9Q1Q|1|5|G|4043
9Q1Q|1|5|U|4044
9Q1Q|1|5|G|4045
9Q1Q|1|5|A|4046
9Q1Q|1|5|A|4047
9Q1Q|1|5|A|4048
9Q1Q|1|5|U|4049
9Q1Q|1|5|A|4050
9Q1Q|1|5|C|4051
9Q1Q|1|5|C|4052
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain K
- Large ribosomal subunit protein uL1
Coloring options: