IL_9Q1Q_145
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- 9Q1Q|1|5|U|4437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_145 not in the Motif Atlas
- Homologous match to IL_9PN5_100
- Geometric discrepancy: 0.1354
- The information below is about IL_9PN5_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36931.4
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 25
Unit IDs
9Q1Q|1|5|G|4405
9Q1Q|1|5|U|4406
9Q1Q|1|5|G|4407
*
9Q1Q|1|5|U|4435
9Q1Q|1|5|U|4436
9Q1Q|1|5|U|4437
9Q1Q|1|5|U|4438
9Q1Q|1|5|U|4439
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Ribosomal protein L10
Coloring options: