IL_9Q1Q_149
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CU*AACG
- Length
- 6 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|4518, 9Q1Q|1|5|C|4519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_149 not in the Motif Atlas
- Homologous match to IL_9PN5_104
- Geometric discrepancy: 0.1695
- The information below is about IL_9PN5_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
9Q1Q|1|5|C|4458
9Q1Q|1|5|U|4459
*
9Q1Q|1|5|A|4517
9Q1Q|1|5|A|4518
9Q1Q|1|5|C|4519
9Q1Q|1|5|G|4520
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- Large ribosomal subunit protein uL14
Coloring options: