IL_9Q1Q_162
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|4708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_162 not in the Motif Atlas
- Homologous match to IL_9H3G_133
- Geometric discrepancy: 0.1835
- The information below is about IL_9H3G_133
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.3
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
9Q1Q|1|5|A|4681
9Q1Q|1|5|U|4682
9Q1Q|1|5|U|4683
9Q1Q|1|5|A|4684
9Q1Q|1|5|U|4685
*
9Q1Q|1|5|A|4705
9Q1Q|1|5|G|4706
9Q1Q|1|5|A|4707
9Q1Q|1|5|A|4708
9Q1Q|1|5|U|4709
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain O
- Large ribosomal subunit protein uL13
- Chain m
- Large ribosomal subunit protein eL40
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