IL_9Q1Q_172

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

9Q1Q|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_172 not in the Motif Atlas

Homologous match to IL_9H3G_143

Geometric discrepancy: 0.1765

The information below is about IL_9H3G_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9Q1Q|1|5|G|5000
9Q1Q|1|5|U|5001
9Q1Q|1|5|U|5002
*
9Q1Q|1|5|G|5045
9Q1Q|1|5|U|5046
9Q1Q|1|5|C|5047
9Q1Q|1|5|A|5048
9Q1Q|1|5|G|5049
9Q1Q|1|5|C|5050

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

uL24

Chain d

60S ribosomal protein L31