IL_9Q1Q_173

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

9Q1Q|1|5|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|U|5003
9Q1Q|1|5|C|5004
9Q1Q|1|5|G|5005
9Q1Q|1|5|U|5006
9Q1Q|1|5|A|5007
9Q1Q|1|5|C|5008
9Q1Q|1|5|G|5009
*
9Q1Q|1|5|U|5039
9Q1Q|1|5|U|5040
9Q1Q|1|5|G|5041
9Q1Q|1|5|A|5042
9Q1Q|1|5|A|5043
9Q1Q|1|5|A|5044

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

uL24

Chain d

60S ribosomal protein L31