IL_9Q1Q_174

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

9Q1Q|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_174 not in the Motif Atlas

Homologous match to IL_8GLP_178

Geometric discrepancy: 0.1602

The information below is about IL_8GLP_178

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Q1Q|1|5|G|5012
9Q1Q|1|5|C|5013
9Q1Q|1|5|A|5014
*
9Q1Q|1|5|U|5035
9Q1Q|1|5|C|5036

Current chains

Chain 5

28S rRNA

Nearby chains