IL_9Q1Q_197
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGAC*GGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_197 not in the Motif Atlas
- Geometric match to IL_4V9F_085
- Geometric discrepancy: 0.2665
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.5
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9Q1Q|1|9|C|188
9Q1Q|1|9|U|189
9Q1Q|1|9|G|190
9Q1Q|1|9|A|191
9Q1Q|1|9|C|192
*
9Q1Q|1|9|G|207
9Q1Q|1|9|G|208
9Q1Q|1|9|A|209
9Q1Q|1|9|U|210
9Q1Q|1|9|G|211
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain II
- 40S ribosomal protein S8
Coloring options: