IL_9Q1Q_203

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9Q1Q|1|9|U|368, 9Q1Q|1|9|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|U|366
9Q1Q|1|9|U|367
9Q1Q|1|9|U|368
9Q1Q|1|9|C|369
9Q1Q|1|9|G|370
9Q1Q|1|9|A|371
*
9Q1Q|1|9|U|393
9Q1Q|1|9|G|394

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

40S ribosomal protein S8

Chain LL

Small ribosomal subunit protein uS17