IL_9Q1Q_216

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_216 not in the Motif Atlas

Homologous match to IL_9H3G_188

Geometric discrepancy: 0.2136

The information below is about IL_9H3G_188

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Q1Q|1|9|C|663
9Q1Q|1|9|A|664
9Q1Q|1|9|G|665
*
9Q1Q|1|9|C|1162
9Q1Q|1|9|C|1163
9Q1Q|1|9|G|1164

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain CC

40S ribosomal protein S2

Chain XX

40S ribosomal protein S23