IL_9Q1Q_231

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9Q1Q|1|9|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_231 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.179

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9Q1Q|1|9|C|931
9Q1Q|1|9|G|932
9Q1Q|1|9|G|933
9Q1Q|1|9|G|934
9Q1Q|1|9|G|935
*
9Q1Q|1|9|C|1007
9Q1Q|1|9|A|1008
9Q1Q|1|9|A|1009
9Q1Q|1|9|G|1010

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

40S ribosomal protein S13

Chain aa

eS26

Chain c

60S ribosomal protein L30