IL_9Q1Q_235

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|C|1047
9Q1Q|1|9|G|1048
9Q1Q|1|9|A|1049
9Q1Q|1|9|A|1050
9Q1Q|1|9|G|1051
*
9Q1Q|1|9|C|1067
9Q1Q|1|9|G|1068
9Q1Q|1|9|U|1069
9Q1Q|1|9|A|1070
9Q1Q|1|9|G|1071

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

60S ribosomal protein L8

Chain OO

Small ribosomal subunit protein uS11

Chain aa

eS26