IL_9Q1Q_242

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9Q1Q|1|9|C|1215, 9Q1Q|1|9|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_242 not in the Motif Atlas

Homologous match to IL_9PN5_197

Geometric discrepancy: 0.149

The information below is about IL_9PN5_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

9Q1Q|1|9|A|1214
9Q1Q|1|9|C|1215
9Q1Q|1|9|C|1216
9Q1Q|1|9|A|1217
*
9Q1Q|1|9|U|1681
9Q1Q|1|9|C|1682
9Q1Q|1|9|C|1683
9Q1Q|1|9|C|1684
9Q1Q|1|9|U|1685

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain FF

Small ribosomal subunit protein uS7

Chain QQ

Small ribosomal subunit protein uS9

Chain aa

eS26

Chain cc

40S ribosomal protein S28