IL_9Q1Q_250

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9Q1Q|1|9|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_250 not in the Motif Atlas

Homologous match to IL_9PN5_203

Geometric discrepancy: 0.0951

The information below is about IL_9PN5_203

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9Q1Q|1|9|G|1325
9Q1Q|1|9|U|1326
9Q1Q|1|9|G|1327
*
9Q1Q|1|9|C|1502
9Q1Q|1|9|C|1503

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain KK

40S ribosomal protein S10

Chain dd

40S ribosomal protein S29