IL_9Q1Q_259

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

9Q1Q|1|9|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_259 not in the Motif Atlas

Geometric match to IL_8GLP_268

Geometric discrepancy: 0.17

The information below is about IL_8GLP_268

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9Q1Q|1|9|C|1412
9Q1Q|1|9|G|1413
*
9Q1Q|1|9|C|1427
9Q1Q|1|9|G|1428
9Q1Q|1|9|G|1429

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain QQ

Small ribosomal subunit protein uS9

Chain TT

Small ribosomal subunit protein eS19