IL_9Q1Q_262
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 9Q1Q|1|9|C|1553, 9Q1Q|1|9|A|1580, 9Q1Q|1|9|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|9|G|1550
9Q1Q|1|9|U|1551
9Q1Q|1|9|G|1552
9Q1Q|1|9|C|1553
9Q1Q|1|9|C|1554
9Q1Q|1|9|U|1555
9Q1Q|1|9|A|1556
9Q1Q|1|9|C|1557
9Q1Q|1|9|C|1558
*
9Q1Q|1|9|G|1577
9Q1Q|1|9|U|1578
9Q1Q|1|9|A|1579
9Q1Q|1|9|A|1580
9Q1Q|1|9|C|1581
9Q1Q|1|9|C|1582
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS3
- Chain KK
- 40S ribosomal protein S10
- Chain UU
- 40S ribosomal protein S20
- Chain dd
- 40S ribosomal protein S29
Coloring options: