IL_9Q1Q_266
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_266 not in the Motif Atlas
- Homologous match to IL_9PN5_221
- Geometric discrepancy: 0.1888
- The information below is about IL_9PN5_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.5
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q1Q|1|9|G|1702
9Q1Q|1|9|C|1703
9Q1Q|1|9|C|1704
9Q1Q|1|9|C|1705
*
9Q1Q|1|9|G|1829
9Q1Q|1|9|U|1830
9Q1Q|1|9|A|1831
9Q1Q|1|9|A|1832
9Q1Q|1|9|C|1833
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain 1
- NediV IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- eL41
Coloring options: