IL_9Q1Q_275
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_275 not in the Motif Atlas
- Homologous match to IL_9H3G_243
- Geometric discrepancy: 0.1038
- The information below is about IL_9H3G_243
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
9Q1Q|1|9|C|1742
9Q1Q|1|9|G|1743
9Q1Q|1|9|G|1744
9Q1Q|1|9|A|1745
9Q1Q|1|9|U|1746
*
9Q1Q|1|9|A|1788
9Q1Q|1|9|G|1789
9Q1Q|1|9|A|1790
9Q1Q|1|9|A|1791
9Q1Q|1|9|G|1792
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain GG
- 40S ribosomal protein S6
- Chain II
- 40S ribosomal protein S8
- Chain W
- uL24
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