IL_9Q1S_028

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9Q1S|1|5|G|666, 9Q1S|1|5|A|667, 9Q1S|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_028 not in the Motif Atlas

Geometric match to IL_7Q80_001

Geometric discrepancy: 0.2016

The information below is about IL_7Q80_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

9Q1S|1|5|G|487
9Q1S|1|5|G|488
*
9Q1S|1|5|C|665
9Q1S|1|5|G|666
9Q1S|1|5|A|667
9Q1S|1|5|C|668
9Q1S|1|5|C|669

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

Large ribosomal subunit protein eL18

Chain r

60S ribosomal protein L28