IL_9Q1S_036

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

9Q1S|1|5|A|932, 9Q1S|1|5|C|934, 9Q1S|1|5|A|935, 9Q1S|1|5|G|935|||A, 9Q1S|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|A|732
9Q1S|1|5|A|733
9Q1S|1|5|G|734
9Q1S|1|5|G|735
*
9Q1S|1|5|C|928
9Q1S|1|5|A|929
9Q1S|1|5|G|930
9Q1S|1|5|C|931
9Q1S|1|5|A|932
9Q1S|1|5|G|933
9Q1S|1|5|C|934
9Q1S|1|5|A|935
9Q1S|1|5|G|935|||A
9Q1S|1|5|C|936
9Q1S|1|5|U|937

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

eL20