IL_9Q1S_038

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGGC*GUGUUACAGC

Length

19 nucleotides

Bulged bases

9Q1S|1|5|G|748, 9Q1S|1|5|U|914, 9Q1S|1|5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|G|745
9Q1S|1|5|A|746
9Q1S|1|5|A|747
9Q1S|1|5|G|748
9Q1S|1|5|G|749
9Q1S|1|5|U|750
9Q1S|1|5|G|751
9Q1S|1|5|G|752
9Q1S|1|5|C|753
*
9Q1S|1|5|G|910
9Q1S|1|5|U|911
9Q1S|1|5|G|912
9Q1S|1|5|U|913
9Q1S|1|5|U|914
9Q1S|1|5|A|915
9Q1S|1|5|C|916
9Q1S|1|5|A|917
9Q1S|1|5|G|918
9Q1S|1|5|C|919

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

eL20