IL_9Q1S_042

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

9Q1S|1|5|C|1214, 9Q1S|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_042 not in the Motif Atlas

Geometric match to IL_8B0X_093

Geometric discrepancy: 0.3186

The information below is about IL_8B0X_093

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9Q1S|1|5|C|1082
9Q1S|1|5|U|1083
9Q1S|1|5|C|1084
*
9Q1S|1|5|G|1213
9Q1S|1|5|C|1214
9Q1S|1|5|C|1215
9Q1S|1|5|C|1216
9Q1S|1|5|G|1217

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain b

Large ribosomal subunit protein eL29