IL_9Q1S_056

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

9Q1S|1|5|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_056 not in the Motif Atlas

Homologous match to IL_8GLP_058

Geometric discrepancy: 0.2282

The information below is about IL_8GLP_058

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9Q1S|1|5|G|1550
9Q1S|1|5|C|1551
*
9Q1S|1|5|G|1576
9Q1S|1|5|G|1577
9Q1S|1|5|U|1578

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain R

60S ribosomal protein L19

Chain p

60S ribosomal protein L37a