IL_9Q1S_080
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9Q1S|1|5|U|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_080 not in the Motif Atlas
- Homologous match to IL_8GLP_081
- Geometric discrepancy: 0.135
- The information below is about IL_8GLP_081
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.8
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 192
Unit IDs
9Q1S|1|5|G|1946
9Q1S|1|5|U|1947
9Q1S|1|5|G|1948
*
9Q1S|1|5|C|2035
9Q1S|1|5|C|2036
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 60S ribosomal protein L9
- Chain I
- Ribosomal protein L10
- Chain S
- eL20
- Chain m
- Large ribosomal subunit protein eL40
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