IL_9Q1S_083
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 9Q1S|1|5|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_083 not in the Motif Atlas
- Homologous match to IL_9PN5_056
- Geometric discrepancy: 0.1038
- The information below is about IL_9PN5_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84227.2
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9Q1S|1|5|C|2290
9Q1S|1|5|G|2291
9Q1S|1|5|C|2292
*
9Q1S|1|5|G|2342
9Q1S|1|5|G|2343
9Q1S|1|5|U|2344
9Q1S|1|5|G|2345
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Large ribosomal subunit protein eL32
- Chain r
- 60S ribosomal protein L28
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