IL_9Q1S_085

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9Q1S|1|5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|C|2302
9Q1S|1|5|C|2303
9Q1S|1|5|U|2304
9Q1S|1|5|U|2305
9Q1S|1|5|G|2306
9Q1S|1|5|A|2307
9Q1S|1|5|A|2308
9Q1S|1|5|G|2309
*
9Q1S|1|5|U|2329
9Q1S|1|5|G|2330
9Q1S|1|5|G|2331
9Q1S|1|5|A|2332
9Q1S|1|5|G|2333

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26

Chain e

Large ribosomal subunit protein eL32